PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S16138.10
Common NameJCGZ_25535, LOC105646512
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 295aa    MW: 30995.2 Da    PI: 9.8234
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S16138.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-063659225
                   -S---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                   k ++C  f+ t  C++G++C+F H
  Jcr4S16138.10 36 KSKPCTKFFSTAGCPFGESCHFLH 59
                   7789******************** PP

2zf-CCCH24.16.3e-08101126227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    k +lC+ +     Ck+Gd+C+FaHg+
  Jcr4S16138.10 101 KSRLCNKYNSAEGCKFGDKCRFAHGE 126
                    6799******99************96 PP

3zf-CCCH27.94.2e-09262286126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +kt+lC +f + G C +G +C+FaHg
  Jcr4S16138.10 262 FKTKLCENFTK-GSCTFGQKCHFAHG 286
                    69*********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.913461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7093462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-63560IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-43659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-83659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-1396129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-798130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.47999127IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-6101126IPR000571Zinc finger, CCCH-type
SMARTSM003560.013101126IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.36E-15159239IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.103.3E-16167238IPR004088K Homology domain, type 1
SMARTSM003229.0E-13167237IPR004087K Homology domain
PROSITE profilePS5008414.823168232IPR004088K Homology domain, type 1
PfamPF000138.5E-11170234IPR004088K Homology domain, type 1
CDDcd001053.71E-14170232No hitNo description
Gene3DG3DSA:4.10.1000.108.9E-15257292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-8260291IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-6261287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666261288IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-7262286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDIRKRGRPE AGFNAGGGFK KYKQEMDSLS TGVGSKSKPC TKFFSTAGCP FGESCHFLHY  60
VPGGYNAVAQ MMNLAPAVTP VSRNIAAPPA VSNGSTQPLV KSRLCNKYNS AEGCKFGDKC  120
RFAHGEWELG KAVAPSHDDP RTIGTIPGRM GGRMEPTPPG PAANFGASAT AKIAVEASLA  180
GAIIGKGGVN SKQICRQTGA KLSIREHETD PNLRNIEFEG SFEQIRQASS MISELIASVS  240
LANSSAKSMG APGGHAHPGS NFKTKLCENF TKGSCTFGQK CHFAHGAAEL RKSGV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087760.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-109C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A067JYK90.0A0A067JYK9_JATCU; Uncharacterized protein
STRINGVIT_08s0007g06400.t011e-165(Vitis vinifera)
STRINGGLYMA19G32910.11e-165(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-98C3H family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]